Research
Software
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About Us
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Following is a list of software created here at Caltech's Cell Center, as
well as software commonly used at the Cell Center. Some of the software
is currently going final changes before beta release, so are not currently
avaibale for download from the Cell Center Wiki.
Software |
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 mdlWiz
is a user friendly graphic user interface (GUI) with easy
to follow steps for creating an MDL file, which you can
then use to generate an MCell simulation.
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bioIVView
is a visualization tool based on Coin OpenInventor
(ivview like), which lets you open, explore, and even
render movies of data from MCell (as filtered by dx2file)
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dx2file
and its GUI counterpart
( dx2file-qt ) is a simple program
designed to parse the openDX-like output of mcell, and filter
it to one of many output formats, including OpenInventor and VTK
(Paraview and VisIt compatible).
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Commonly Used Software |
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mCell:
(A Monte Carlo Simulator of Cellular Microphysiology)
MCell is a modeling tool for realistic simulation of
cellular signaling in the complex 3-D subcellular
microenvironment in and around living cells
--what is called cellular microphysiology.
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Mussa:
(Multi-Species Sequence Analysis)
Mussa is a bioinformatics tool for finding and visualizing
regions of conserved DNA by comparing across several species.
It has been found that conserved regions are frequently enriched
for regions that are functionally important. Thus Mussa is a tool
to help discover previously unknown functional DNA elements.
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